Uses of Class
pal.substmodel.AminoAcidModel
Packages that use AminoAcidModel
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Uses of AminoAcidModel in pal.substmodel
Subclasses of AminoAcidModel in pal.substmodelModifier and TypeClassDescriptionclass
BLOSUM62 model of amino acid evolutionclass
CPREV model of amino acid evolution (J.Adachi et al.class
Dayhoff model for amino acid evolution Dayhoff, M.O., Schwartz, R.M., Orcutt, B.C.class
JTT model of amino acid evolution Jones, D.class
MTREV24 model of amino acid evolutionclass
VT (variable time matrix) model of amino acid evolution Modeling Amino Acid Replacement Mueller, T.class
WAG model of amino acid evolution (S.Methods in pal.substmodel that return AminoAcidModelModifier and TypeMethodDescriptionstatic AminoAcidModel
AminoAcidModel.getInstance
(int modelID, double[] freq) Create amino acid model according to model type