Uses of Interface
pal.treesearch.SearchMonitor
Packages that use SearchMonitor
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Uses of SearchMonitor in pal.treesearch
Methods in pal.treesearch that return SearchMonitorModifier and TypeMethodDescriptionstatic final SearchMonitor
SearchMonitor.Utils.createNullMonitor()
Methods in pal.treesearch with parameters of type SearchMonitorModifier and TypeMethodDescriptiondouble
GeneralLikelihoodSearcher.optimiseAllFullHeirarchy
(StoppingCriteria mainStopper, StoppingCriteria subStopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseAllPlusSubstitutionModel
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, MultivariateMinimum substitutionModelMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, int substitutionModelOptimiseFrequency, MinimiserMonitor substitutionModelMonitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseAllSimple
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseAllSimple
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor, int groupOptimistionType) double
GeneralLikelihoodSearcher.optimiseAllSimpleHeirarchy
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseGeneral
(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback, SearchMonitor monitor)